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@WEHI-SODA-Hub

WEHI SODA Hub

Spatial Omics Data Analytics Hub based at The Walter and Eliza Hall Institute of Medical Research

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  1. RdfCrate RdfCrate Public

    Library for building RO-Crates using rdflib

    Python 4

  2. sp_celltype_apply sp_celltype_apply Public

    Apply a trained XGBoost model on pre-processed data to predict cell types

    Python 2

  3. omerocrate omerocrate Public

    Tools for uploading an RO-Crate dataset to Omero

    Python 2

  4. sp_celltype_preprocess sp_celltype_preprocess Public

    Prepare data in csv format for either training or prediction

    Python

  5. sp_celltype_train sp_celltype_train Public

    Train an XGBoost model on a pre-processed labelled spatial proteomics dataset using Nextflow parallelisation

    Python

  6. vizgen-postprocessing_container vizgen-postprocessing_container Public

    Container for running vizgen-postprocessing tool with the cellpose2 plugin

    Dockerfile

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