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code for "Adjoint Sampling: Highly Scalable Diffusion Samplers via Adjoint Matching"
Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http://bit.ly/cheap-proteins
Official repository for the paper "Peptide design through binding interface mimicry with PepMimic" accepted by Nature Biomedical Engineering
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
A trainable PyTorch reproduction of AlphaFold 3.
A universal structure-directed lead optimization
(Supports DeepSeek R1) An AI-powered research assistant that performs iterative, deep research on any topic by combining search engines, web scraping, and large language models.
An AI-powered research assistant that performs iterative, deep research on any topic by combining search engines, web scraping, and large language models. The goal of this repo is to provide the si…
FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation
Affinity Protein-Protein Transformers—State of the art protein-protein binding affinity in seconds!
Machine Learning Toolkit accompanying The Little Learner by Daniel P. Friedman and Anurag Mendhekar
DECIMER Image Transformer is a deep-learning-based tool designed for automated recognition of chemical structure images. Leveraging transformer architectures, the model converts chemical images int…
The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibod…
The all-in-one Desktop & Docker AI application with built-in RAG, AI agents, No-code agent builder, MCP compatibility, and more.
Official repository for the Boltz biomolecular interaction models
SuperPrompt is an attempt to engineer prompts that might help us understand AI agents.
A playbook for systematically maximizing the performance of deep learning models.
Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
A Light Event-Driven Algorithmic Trading Engine
Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation