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AltHapAlignR_py Public archive
Python script to combine BAM files and intersect them with a GTF file, used in jknightlab/AltHapAlignR
Python MIT License UpdatedAug 22, 2025 -
muffato.github.io Public
The Jekyll source code and content of my personal website
Python UpdatedAug 15, 2025 -
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carla-git Public
Forked from carlacummins/carla-gitRepo for useful scripts originally written by Carla. Only ibsub is maintained
Perl UpdatedApr 9, 2025 -
js-sample-elevation-paths Public
Forked from googlemaps/js-samplesSamples for elevation maps using Google Maps JavaScript v3 API
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treebest Public archive
Forked from Ensembl/treebestMy git clone of Heng Li's treebest from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/ . Further modifications (fork from Ensembl/treebest) are on the ensembl_master branch
C GNU General Public License v2.0 UpdatedFeb 21, 2022 -
SSH-control-panel Public archive
Control panel for SSH tunnels and SSHFS mounts
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command-launcher Public archive
Command launcher written in PyQT that adds a menu to the system tray
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ensembl-compara Public archive
Forked from Ensembl/ensembl-comparaThe Ensembl Compara Perl API and SQL schema
Perl Apache License 2.0 UpdatedFeb 17, 2022 -
ensembl-hive Public archive
Forked from Ensembl/ensembl-hiveEnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
Perl Apache License 2.0 UpdatedJan 13, 2022 -
ensembl-hive-docker-swarm Public archive
Forked from Ensembl/ensembl-hive-docker-swarm'Docker Swarm' implementation of Ensembl Hive Meadow interface
Perl Apache License 2.0 UpdatedJan 10, 2022 -
ensembl-hive-pbspro Public archive
Forked from Ensembl/ensembl-hive-pbspro'PBS Pro' implementation of Ensembl Hive Meadow interface
Perl Apache License 2.0 UpdatedJan 10, 2022 -
guiHive Public archive
Forked from Ensembl/guiHiveGraphical interface for the eHive workflow manager
JavaScript Apache License 2.0 UpdatedJan 6, 2022 -
ensembl-hive-slurm Public archive
Forked from tweep/ensembl-hive-slurmSlurm Meadow for Ensembl Hive
Perl Apache License 2.0 UpdatedSep 7, 2021 -
ensembl-hive-sge Public archive
Forked from Ensembl/ensembl-hive-sgeSGE Meadow for Ensembl Hive
Perl Apache License 2.0 UpdatedAug 7, 2021 -
ensj-healthcheck Public archive
Forked from Ensembl/ensj-healthcheckEnsembl's Automated QC Framework
Java Apache License 2.0 UpdatedApr 26, 2021 -
ensembl-tools Public archive
Various tools that simplify working in Ensembl
Shell Apache License 2.0 UpdatedJan 6, 2021 -
docker-ensembl-linuxbrew-compara Public archive
Docker image with all dependencies to run the Ensembl Compara pipelines
Dockerfile Apache License 2.0 UpdatedJan 6, 2021 -
docker-ensembl-linuxbrew-basic-dependencies Public archive
Docker image with the basic dependencies for the Ensembl linuxbrew installation
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ensembl-mysql-monitor Public archive
Cron scripts to monitor the Ensembl Compara MySQL servers
Perl Apache License 2.0 UpdatedDec 19, 2020 -
ensembl-hive-htcondor Public archive
Forked from Ensembl/ensembl-hive-htcondorHTCondor Meadow for Ensembl Hive. Additional code to test GitHub workflows and packages
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ensembl-webcode-sandbox Public archive
Configuration files for an Ensembl sandbox website
Perl Apache License 2.0 UpdatedJul 5, 2020 -
snipmate.vim Public
Forked from msanders/snipmate.vimFork of msanders/snipmate.vim to keep my vim configuration
Vim Snippet UpdatedJun 10, 2020 -
ensembl-download-java Public archive
Java code to download genomes and orthologues from Ensembl
Java Other UpdatedApr 14, 2020 -
pywaltrap Public archive
Python interface for the community detection program Walktrap
C++ GNU General Public License v2.0 UpdatedApr 13, 2020 -
pyEnsemblRest Public archive
Python wrapper of the Ensembl REST API
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phd-thesis-scripts Public archive
Backup of the scripts I used during my PhD thesis to build the Agora ancestral-genome reconstruction toolkit
Python Other UpdatedJun 23, 2019 -
XML-To-Blockly Public archive
Forked from Ensembl/XML-To-BlocklyTakes RelaxNG schema as input and generates corresponding code for a Blockly block to represent the same
JavaScript Apache License 2.0 UpdatedApr 12, 2019 -
hcluster Public archive
My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/
C++ GNU General Public License v2.0 UpdatedSep 27, 2018 -
eHive-Blockly Public archive
Playground for Blockly and eHive
JavaScript Apache License 2.0 UpdatedOct 3, 2016
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