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spermatogenesisTMAO Public
Gut microbiota-derived Trimethylamine N-oxide impairs spermatogenesis
Shell UpdatedJun 23, 2025 -
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SurvivalML Public
Forked from Zaoqu-Liu/SurvivalMLIdentification and Validation Robust Prognostic Biomarkers and Signatures in Solid Tumors
R GNU General Public License v3.0 UpdatedApr 1, 2025 -
Resistome_ReadBased_Snakemake Public
Forked from aponsero/Resistome_ReadBased_SnakemakeSnakemake pipeline for Resistome and Mobilome annotation of unassembled metagenomes
Python MIT License UpdatedJul 16, 2024 -
T2D_Microbiome_Meta-analysis Public
Forked from DW-Group/T2D_Microbiome_Meta-analysisGut Microbial Signatures and Strain-Specific Functions in Type 2 Diabetes Revealed by a Cross-Cohort Analysis of 8,123 Metagenomes
R UpdatedApr 2, 2024 -
PhDThesis Public
Forked from JarningGau/PhDThesisanalysis codes for PhD thesis
Jupyter Notebook MIT License UpdatedJan 10, 2024 -
GutMircobiome_WomenHealth Public
Forked from TerenceDong/GutMircobiome_WomenHealthDisentangling the age-dependent manner in the associations between gut microbiome and women’s health: a multi-cohort microbiome study
R UpdatedDec 9, 2023 -
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scib Public
Forked from theislab/scibBenchmarking analysis of data integration tools
Python MIT License UpdatedAug 10, 2023 -
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training-collection Public
Forked from sib-swiss/training-collectionCollection of bioinformatics training materials
Other UpdatedNov 15, 2022 -
awesome-pipeline Public
Forked from pditommaso/awesome-pipelineA curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
UpdatedOct 27, 2022 -
common-workflow-language Public
Forked from common-workflow-language/common-workflow-languageRepository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Common Workflow Language Apache License 2.0 UpdatedOct 13, 2022 -
RNAseq_titration_results Public
Forked from greenelab/RNAseq_titration_resultsCross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
R BSD 3-Clause "New" or "Revised" License UpdatedOct 12, 2022 -
eat_pytorch_in_20_days Public
Forked from lyhue1991/eat_pytorch_in_20_daysPytorch🍊🍉 is delicious, just eat it! 😋😋
Jupyter Notebook Apache License 2.0 UpdatedSep 21, 2022 -
d2l-zh Public
Forked from d2l-ai/d2l-zh《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被60个国家的400所大学用于教学。
Python Apache License 2.0 UpdatedSep 14, 2022 -
QIIME2_16SV4_Pipeline Public
Forked from terauchih/QIIME2_16SV4_PipelineA bash scripts for running QIIME2 analysis on 16SV4 amplicon analysis on bacterial sequences generated with Illumina MiSeq. The pipeline utilizes the HPCC and thei'r specific job submission commands.
Shell UpdatedSep 1, 2022 -
machine-learning-resource Public
Forked from crazyhottommy/machine-learning-resourceUpdatedAug 25, 2022 -
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cfMeDIP_PCa Public
Forked from nikou123456/cfMeDIP_PCaAnalyses for Manuscrip "The cell free DNA methylome captures distinctions between localized and metastatic“ prostate tumors
R UpdatedAug 8, 2022 -
COVID-19 Public
Forked from ShanlinKe/COVID-19Dissecting the Role of the Human Microbiome in COVID-19 via Metagenome-assembled Genomes
R MIT License UpdatedJul 27, 2022 -
Fertile-Men-Semen-Analysis Public
Forked from namandalsania/Fertile-Men-Semen-AnalysisAnalysing fertile man semen data for WHO.
Jupyter Notebook UpdatedJul 23, 2022 -
kkndme Public
Forked from momo0853/kkndmekkndme聊房，数据整理自天涯。提供HTML、PDF和Markdown三种形式。
HTML UpdatedJun 13, 2022 -
SpermQ Public
Forked from hansenjn/SpermQAn ImageJ plugin to analyze the flagellar beat of sperm, motile cilia beat, and sperm steering.
Java GNU General Public License v3.0 UpdatedJun 9, 2022 -
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Python-AI Public
Forked from kzbkzb/Python-AI深度学习100例、深度学习DL、图片分类、目标识别、目标检测、自然语言处理nlp、文本分类、TensorFlow、PyTorch
Jupyter Notebook UpdatedJan 12, 2022 -
snRNAseq_eWAT Public
Forked from JesperGrud/snRNAseq_eWATScripts for analysis of primary and supplementary snRNA-seq datasets from epididymal white adipose tissue from lean and obese mice.
The Unlicense UpdatedDec 8, 2021 -
CircRNA_pan-cancer Public
Forked from Selecton98/CircRNA_pan-cancerData and codes for article entitled 'Machine Learning-based Comparative Analysis of Pan-cancer and Pan-normal Tissues Identifies Pan-cancer Tissue-enriched circRNA Related to Cancer Mutation as Pot…
R UpdatedOct 5, 2021 -
m5c_lncRNA_PCa Public
5-methylcytosine RNA Methyltransferases-Related Long Non-coding RNA to Develop and Validate Biochemical Recurrence Signature in Prostate Cancer
UpdatedSep 16, 2021 -
CancerMIRNome Public
Forked from rli012/CancerMIRNomeCancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer
R UpdatedSep 12, 2021
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