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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.6k 484

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 484 105

  3. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Python 311 30

  4. UNI UNI Public

    Pathology Foundation Model - Nature Medicine

    Jupyter Notebook 674 82

  5. CONCH CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    Python 471 47

  6. MIL-Lab MIL-Lab Public

    Feather - Lightweight supervised slide foundation models (ICML 2025)

    Python 132 22

Repositories

Showing 10 of 34 repositories
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT’s past year of commit activity
    Python 484 105 26 (1 issue needs help) 12 Updated Feb 9, 2026
  • HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    mahmoodlab/HEST’s past year of commit activity
    Python 363 41 19 0 Updated Feb 8, 2026
  • MIL-Lab Public

    Feather - Lightweight supervised slide foundation models (ICML 2025)

    mahmoodlab/MIL-Lab’s past year of commit activity
    Python 132 22 1 0 Updated Feb 5, 2026
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Python 311 30 1 0 Updated Dec 13, 2025
  • Patho-Bench Public

    Standardized benchmark for computational pathology foundation models.

    mahmoodlab/Patho-Bench’s past year of commit activity
    Python 130 27 7 0 Updated Nov 7, 2025
  • KRONOS Public

    Foundation Model for Multiplex Spatial Proteomic Images

    mahmoodlab/KRONOS’s past year of commit activity
    Jupyter Notebook 176 28 2 1 Updated Aug 21, 2025
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,606 GPL-3.0 484 34 12 Updated Apr 14, 2025
  • UNI Public

    Pathology Foundation Model - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 674 82 29 2 Updated Mar 26, 2025
  • CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 471 47 13 2 Updated Mar 26, 2025
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 113 14 1 0 Updated Feb 22, 2025
View all repositories

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