Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease

BAM Statistics, Feature Counting and Annotation

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Constantly updated lists of world countries and their associated alpha-2, alpha-3 and numeric country codes as defined by the ISO 3166 standard, available in CSV, JSON , PHP, SQL and XML formats, i…

Tandem Repeats Finder: a program to analyze DNA sequences

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

A read extraction and realignment tool for next generation sequencing data

ggplot geoms with pattern fills

Typora theme for the academy

eBay's TSV Utilities: Command line tools for large, tabular data files. Filtering, statistics, sampling, joins and more.

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Ma…

An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and…

A Markov chain Monte Carlo method that estimates complexity of infection and population allele frequencies using SNP data obtained from Sequenom or similar types of SNP assays.