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Message Passing Neural Networks for Molecule Property Prediction

Python 2,140 691 Updated Oct 13, 2025

Generate 3D conformers from a SMILES string with RDKit, pick the median conformer, and export it as a PDB file. Use this for high‑quality rendering in PyMol to create publication-ready images.

Python 3 Updated Aug 28, 2025

Machine Learning and Computer Vision Engineer - Technical Interview Questions

4,165 672 Updated May 20, 2025

This repo is meant to serve as a guide for Machine Learning/AI technical interviews.

Jupyter Notebook 7,062 1,277 Updated Jun 23, 2025

Drug Overlapper is a modular Python pipeline for generating conformers, scoring molecular overlaps from SDF files, and exporting results as HTML and pickle files.

Python 1 Updated Mar 21, 2025

Repo containing the code of the peptide design genetic algorithm (PDGA).

Python 2 1 Updated Jun 12, 2025

Repository for the NPstereo chirality prediction tool

Jupyter Notebook 5 2 Updated Aug 14, 2025

Chiral Version of the MinHashed Atom-Pair Fingerprint

Python 23 6 Updated Dec 20, 2024

Open-source version of the MXFP fingerprint based on Python and the RDKit

HTML 6 1 Updated Sep 27, 2024

RDKit wrapper to generate 3D structures with maxmium overlap.

Python 6 Updated Jul 4, 2025