Merge pull request biolink#499 from biolink/version-updates

Updated versions of packages

Merge pull request biolink#498 from biolink/neo4j-version-update

Update neo4j dependency version

Merge pull request biolink#489 from biolink/update_bmt_1.4.0

update bmt to 1.4.0

Merge pull request biolink#488 from biolink/update_bmt_1.4.0

Fixing KGX to support testing knowledge_level and agent_type

Merge pull request biolink#485 from biolink/fix_failing_test

update linkml, linkml-runtime, bmt, tests to take advantage of newer biolink model

Merge pull request biolink#480 from biolink/jsonlines-update

Updating `jsonlines` dependecy version.

Merge pull request biolink#479 from biolink/ease-tox-version

Updating tox version

Merge pull request biolink#475 from biolink/issue-470-meta-property-p…

…ropagation

Issue#470 - fix propagation of 'deprecate' metadata flag

Merge pull request biolink#473 from biolink/NCBI_id_to_OrganismTaxon

fix auto-assignment of category

Merge pull request biolink#468 from biolink/update_dependencies

update sparqlwrapper