Thanks to visit codestin.com
Credit goes to github.com

Skip to content
/ spectrum Public

Scripts for analysing mutational spectrum

7 stars 0 forks Branches Tags Activity
Star

mathii/spectrum

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

138 Commits
.gitignore
.gitignore
 
 
1kgP3_panel.txt
1kgP3_panel.txt
 
 
ANALYSIS
ANALYSIS
 
 
CCTT_spectrum.py
CCTT_spectrum.py
 
 
Component_plot_map.R
Component_plot_map.R
 
 
Distance_Mantel_test.R
Distance_Mantel_test.R
 
 
alexandrovmap.txt
alexandrovmap.txt
 
 
analyse_1kg.R
analyse_1kg.R
 
 
analyse_sgdp_rate.R
analyse_sgdp_rate.R
 
 
analyse_simulation_spectrum.R
analyse_simulation_spectrum.R
 
 
classify_DNMs.py
classify_DNMs.py
 
 
compare_decomposition.R
compare_decomposition.R
 
 
compute_fn_africa_sharing.R
compute_fn_africa_sharing.R
 
 
cosmic_correlation.R
cosmic_correlation.R
 
 
coverage.R
coverage.R
 
 
cteam_panel
cteam_panel
 
 
distance_from_addis_ababa.R
distance_from_addis_ababa.R
 
 
estimate_increase.R
estimate_increase.R
 
 
genome_context.py
genome_context.py
 
 
gwas_power.R
gwas_power.R
 
 
het_from_vcf.py
het_from_vcf.py
 
 
lat_lon_test.R
lat_lon_test.R
 
 
location_info.txt
location_info.txt
 
 
make_recombination_decile_fasta.py
make_recombination_decile_fasta.py
 
 
make_spectrum_matrix.R
make_spectrum_matrix.R
 
 
make_tx_strand_fasta.py
make_tx_strand_fasta.py
 
 
mutation_spectrum.py
mutation_spectrum.py
 
 
plot_ALL_against_f2.R
plot_ALL_against_f2.R
 
 
plot_B_statistics.R
plot_B_statistics.R
 
 
plot_cosmic_signatures.R
plot_cosmic_signatures.R
 
 
plot_f2_age_estimate.R
plot_f2_age_estimate.R
 
 
plot_meta.R
plot_meta.R
 
 
plot_methylation_status.R
plot_methylation_status.R
 
 
plot_proportions_against_fn.R
plot_proportions_against_fn.R
 
 
plot_psmc_rate.R
plot_psmc_rate.R
 
 
plot_psmc_rate_French.R
plot_psmc_rate_French.R
 
 
plot_scans.R
plot_scans.R
 
 
plot_strand_bias.R
plot_strand_bias.R
 
 
remove_motif.py
remove_motif.py
 
 
repeat_spectrum.R
repeat_spectrum.R
 
 
replot_random_loadings.R
replot_random_loadings.R
 
 
run_EMu.R
run_EMu.R
 
 
run_NMF.R
run_NMF.R
 
 
run_pmsignature.R
run_pmsignature.R
 
 
sgdp_mtuatation_accumulation_table.txt
sgdp_mtuatation_accumulation_table.txt
 
 
singleton_pca_cell_line_spectrum.R
singleton_pca_cell_line_spectrum.R
 
 
spectrumlib.R
spectrumlib.R
 
 
split_vcf_Africa.py
split_vcf_Africa.py
 
 
split_vcf_CpG.py
split_vcf_CpG.py
 
 
test_CCTT_spectrum.R
test_CCTT_spectrum.R
 
 
test_PCA.R
test_PCA.R
 
 
test_ancient.R
test_ancient.R
 
 
test_ancient2.R
test_ancient2.R
 
 

About

Scripts for analysing mutational spectrum

Activity

Stars

7 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

No releases published

Packages

No packages published

Languages