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@edamontology @elixir-no-nels @bioxsd @bio-tools @bergenopensource @bio-tools-community

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Open Source Computer Vision Library

C++ 84,655 56,334 Updated Oct 28, 2025

preliminary investigation of biocViews in relation to EDAM ontology

R 3 4 Updated Oct 19, 2025

Solving i18n for client-side and resource-constrained environments.

Rust 1,640 230 Updated Oct 29, 2025

This is the Rust course used by the Android team at Google. It provides you the material to quickly teach Rust.

Rust 32,195 1,919 Updated Oct 20, 2025

A collection of Galaxy-related training material

HTML 343 1,011 Updated Oct 29, 2025

Python IDE for beginners

Python 3,593 1,156 Updated Oct 21, 2025

Environmental Impact

8 2 Updated Jul 4, 2025

Model repository for bioimage.io

17 9 Updated Aug 7, 2023

Search strings for finding SDG-related works per goal and target (python script, WoS search strategy)

Jupyter Notebook 2 4 Updated Oct 28, 2025

Should you cite this software?

CSS 31 2 Updated Jul 2, 2020

Australian BioCommons ToolFinder and WorkflowFinder: contains tool and workflow install status

Python 6 2 Updated Oct 27, 2025

Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)

HTML 22 30 Updated Oct 29, 2025

A utility constructing bio.tools entries from publications

Java 5 5 Updated Sep 2, 2024

A Java command-line tool and library to download and store publications with metadata by combining content from various online resources

Java 8 1 Updated Aug 29, 2024

A tool for mapping various text input to EDAM ontology concepts

Java 9 5 Updated Sep 2, 2024

Fair-code workflow automation platform with native AI capabilities. Combine visual building with custom code, self-host or cloud, 400+ integrations.

TypeScript 152,561 48,677 Updated Oct 29, 2025

Biology Node2Node (BioN2N) is an open source project to develop biodiversity informatics nodes for the n8n.io workflow automation platform

TypeScript 9 3 Updated Jul 24, 2025
Jupyter Notebook 9 3 Updated Jul 7, 2022

(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)

536 36 Updated Jun 22, 2025

Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)

Python 25 1 Updated Oct 23, 2025

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

Python 5,662 3,622 Updated Aug 23, 2024
Python 129 17 Updated Aug 9, 2016

my personal website

CSS 1 1 Updated Sep 4, 2025

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

Python 513 117 Updated Apr 7, 2025

A lightweight polyfill library for Promise-based WebExtension APIs in Chrome

JavaScript 2,983 228 Updated Oct 28, 2025

A Python-packaged version of EDAM Ontology Data (http://edamontology.org/)

Python 4 Updated Jul 26, 2021

Javascript library to convert EDAM to JSON/JSON-LD

JavaScript 3 2 Updated Jun 18, 2025

ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification

Jupyter Notebook 10 6 Updated Sep 3, 2021
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