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@AndreaGuarracino
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The current SAM format output does not work properly with tools like samtools. Checking it with the quickcheck command, I get:

samtools quickcheck reads.sam
reads.sam was not identified as sequence data.

The problems were a few non-TAB-separated rows.

Emit TAB-separated SAM rows
Emit TAB-separated SAM rows
@maxrossi91
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Thanks for the fix.

@maxrossi91 maxrossi91 merged commit 9b5b441 into maxrossi91:main Sep 18, 2024
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2 participants