Releases: mourisl/Lighter
Releases · mourisl/Lighter
Lighter v1.1.3
Lighter v1.1.2
- Allow dumping and loading trusted kmers.
- Fix a serious bug that may cause crashing when using more than 2 threads. (Thanks to @ealdraed).
Lighter v1.1.1
- Fix a bug that may trim the sequence of a read.
Lighter v1.1.0
- Allow user to change maximum kmer size before compile Lighter.
- Change the definition of -maxcor.
- Fix some bugs affecting the sensitivity of correction.
Lighter v1.0.7
- Improve the sensitivity of error correction while keeping precision.
- Fix a bug of reading files when sampling and obtaining solid kmers. So now, each run with the same setting generates the same results.
- Fix a small issue when reporting the summary of results.
Lighter v1.0.6
- Improved the error correction module
- Can generate the same result when multi-threading ("derandomization")
- Faster way to estimate the false positive rate of bloom filter
- Changed the output file name when the input files are gizpped.
Lighter v1.0.5
- Optimize the parallelization of error correction stage.
- Slightly optimize the parallelization of obtaining solid kmer stage.
- Slightly improvement to the sensitivity
- Can change the compress level by "-zlib". Can set the new quality score for corrected bases by "-newQual".
Lighter v1.0.4
- Support gzip'ed files
- Provide "-K" parameter which infers the coverage and alpha given genome size.
Lighter v1.0.3
- Optimized and parallelized the sampling stage.
- Fix bugs in the bloom filter, so it can handle large genome that creating a bit table much larger than 2^32 bits.
Lighter v1.0.2
- Fix a bug for -maxcor.
- Change the threshold for trusted position. The rule of thumb for choosing alpha changes to 7/C, where C is the coverage.