'Greece' meeting room Konzerthaus Freiburg
We are using 'small' instances from the XSEDE JetStream and de.NBI and NECTAR clouds with 2 cores, 4 GiB memory, 20 GiB disk, running a minimal Ubuntu 18.04 image
The instances have been bootstrapped with a small Ansible playbook, which you may find useful for repeating the exercises at home using a VM, Docker image, etc.
1st July
| Time | Topic | Slides | Exercises | Instructor |
|---|---|---|---|---|
| 10:00 | Welcome and introduction | Welcome | All | |
| 10:20 | Intro to Ansible | Ansible | Exercise | S |
| 11:00 | Galaxy Server Part 1: Basic Install | Database, uWSGI | Exercise | M, N, H |
| 12:00 | Lunch | |||
| 13:00 | Galaxy Server Part 2: Towards Production | NGINX, Supervisor | M, S, H | |
| 15:00 | Break (coffee & snacks) | |||
| 15:30 | Galaxy Server Part 3: Advanced Install | Production | M, H | |
| 16:30 | Connecting Galaxy to a compute cluster | Slides | Exercise | N |
| 17:30 | Close Day 1 |
- Simon Gladman - Galaxy Australia, Melbourne Bioinformatics, University of Melbourne, Australia
- Helena Rasche - Galaxy Europe (ELIXIR Galaxy WG, Elixir Germany, de.NBI), University of Freiburg, Germany
- Nate Coraor - Galaxy Project, Penn State University, USA
- John Chilton - Galaxy Project, Penn State University, USA
- Martin Čech - Galaxy Project, Penn State University, USA
- Enis Afgan
- Marius van den Beek