Track Nextflow strict syntax linting health across nf-core pipelines

VCF visualization interface

A Java API for high-throughput sequencing data (HTS) formats.

STR genotyping with WGS and Amplicon/Target sequencing data

A Snakemake-based structural variant analysis workflow leveraging OctopusV's capabilities.

Efficient merging of structural variants from multiple SV callers and samples

Use various fgbio functions and classes in your Nextflow scope.

Nextflow runs monitoring and organisation UI

Aligns short reads using dynamic seed size with strobemers

Command line tool for Wave containers provisioning service

Nextflow project to be developed for the micro-credential VIB/UGent - Reproducble analysis

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

Where new ideas for nf-core pipelines, special interest groups and more are proposed

Call select base modifications in PacBio HiFi reads

Joint structural variant and copy number variant caller for HiFi sequencing data

Structural variant (SV) analysis tools

🎨 The adorable charts library for Golang.

Specifications of Nextflow schemas

A Nextflow pipeline to play Doom

gatk4 RNA variant calling pipeline

RNA-seq analysis pipeline for detection of gene-fusions

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair

nf-core/references is a bioinformatics pipeline that build references, for multiple use cases

ASCII generator (image to text, image to image, video to video)

A linter for Nextflow built on top of the Nextflow Language Server

nf-test plugin to provide support for FASTQ files.

An nf-test plugin for reading the contents of SAM/BAM/CRAM files in assertions