Pan-cancer assessment of the tumour and systemic T-cell receptor repertoire dynamics in patients treated with pembrolizumab

Methods to compute Local Inverse Simpson's Index (LISI)

Decombinator v5: fast, error-correcting analysis of TCR repertoires

Build an AI Tool for Extracting Information from Laboratory Documentation

Scissor package

TCR validated database

Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

❗ This is a read-only mirror of the CRAN R package repository. epitopeR — Predict Peptide-MHC Binding

Plaid is an ultra-fast method to compute single-sample enrichment scores for gene expression or proteomics data

A modular pipeline for the discovery of TCR metaclones

a simple python script to generate a geographical map of my collaborations based on scival/scopus metrics

Fast trie-based search for TCR sequences with Levenshtein and substitution matrix support

IDEIS is a software for CD45 isoform detection in single-cell data.

Single-cell immune repertoire trajectory analysis in R

ColabFold on your local PC

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire base…

Fast and accurate in silico inference of HLA genotypes from RNA-seq

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

hla package

Package to call MHCnuggets from R, to predict MHC-I and MHC-II epitopes

An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis