Thanks to visit codestin.com
Credit goes to github.com

Skip to content
@ncbi-nlp

NLM/NCBI BioNLP Research Group (PI: Zhiyong Lu)

These tools are the results of research conducted in the Computational Biology Branch, NLM/NCBI.

Popular repositories Loading

  1. BioSentVec BioSentVec Public

    BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

    Jupyter Notebook 602 100

  2. bluebert bluebert Public

    BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

    Python 581 81

  3. BLUE_Benchmark BLUE_Benchmark Public

    BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

    Python 297 41

  4. NegBio NegBio Public

    📰 High-performance tool for negation and uncertainty detection in radiology reports

    Python 163 43

  5. BioWordVec BioWordVec Public

    Python 152 30

  6. TrialGPT TrialGPT Public

    Code and data for TrialGPT.

    Python 131 59

Repositories

Showing 10 of 39 repositories
  • MedCalc-Bench Public

    [NeurIPS 2024 Datasets and Benchmark Track Oral] MedCalc-Bench: Evaluating Large Language Models for Medical Calculations

    ncbi-nlp/MedCalc-Bench’s past year of commit activity
    Python 74 15 0 0 Updated Oct 25, 2025
  • GeneAgent Public

    The code for gene set analysis by accessing domain databases

    ncbi-nlp/GeneAgent’s past year of commit activity
    Python 81 14 3 2 Updated Sep 26, 2025
  • cell-o1 Public

    Code and data for Cell-o1.

    ncbi-nlp/cell-o1’s past year of commit activity
    Python 25 2 0 0 Updated Sep 19, 2025
  • FAIR-SMART Public
    ncbi-nlp/FAIR-SMART’s past year of commit activity
    Java 1 1 0 0 Updated Sep 4, 2025
  • BioREDirect Public
    ncbi-nlp/BioREDirect’s past year of commit activity
    Python 10 0 0 0 Updated Aug 20, 2025
  • ncbi-nlp/LLM-Medicine-Primer’s past year of commit activity
    8 2 0 0 Updated Aug 13, 2025
  • ncbi-nlp/Clinical-Tool-Learning’s past year of commit activity
    Python 10 1 0 0 Updated Aug 10, 2025
  • DeepSeeNet Public

    👀 DeepSeeNet is a deep learning framework for classifying patient-based age-related macular degeneration severity in retinal color fundus photographs.

    ncbi-nlp/DeepSeeNet’s past year of commit activity
    Python 64 30 2 1 Updated Jul 25, 2025
  • ncbi-nlp/deepseenet-plus’s past year of commit activity
    Python 1 0 1 0 Updated Jul 25, 2025
  • ncbi-nlp/adversarial-manipulations’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 24, 2025

People

This organization has no public members. You must be a member to see who’s a part of this organization.