NCEZID-EDLB
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pn2.0-mlst-databases
pn2.0-mlst-databases PublicDatabases for wg/cgMLST analysis with the PN2.0 software
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HMAS-QC-Pipeline2
HMAS-QC-Pipeline2 PublicAn analysis pipeline for initial quality control and denoising of highly-multiplexed amplicon sequencing (HMAS) data, now without using mothur (as was used in the previous version)
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AlleleCodes
AlleleCodes PublicForked from gmaniscoo/AlleleCodes
Python script(s) for assigning allele codes under current PulseNet nomenclature system in BioNumerics but as a command-line executable without BioNumerics dependencies
Repositories
- basespace_automation Public
scripts for automatic downloading fastq.gz files from basespace account and kick off step_mothur pipeline
ncezid-biome/basespace_automationās past year of commit activity - stylo Public
ncezid-biome/styloās past year of commit activity - AlleleCodes Public Forked from gmaniscoo/AlleleCodes
Python script(s) for assigning allele codes under current PulseNet nomenclature system in BioNumerics but as a command-line executable without BioNumerics dependencies
ncezid-biome/AlleleCodesās past year of commit activity - HMAS-QC-Pipeline2 Public
An analysis pipeline for initial quality control and denoising of highly-multiplexed amplicon sequencing (HMAS) data, now without using mothur (as was used in the previous version)
ncezid-biome/HMAS-QC-Pipeline2ās past year of commit activity - HMAS-QC-Pipeline Public Forked from jessicarowell/HMAS-QC-Pipeline
A pipeline for performing quality control on HMAS data, in preparation for downstream MLST-like or AMR-like analyses.
ncezid-biome/HMAS-QC-Pipelineās past year of commit activity - docker-builds Public Forked from StaPH-B/docker-builds
š¦ š³ Dockerfiles and documentation on tools for public health bioinformatics
ncezid-biome/docker-buildsās past year of commit activity - MatrixCodes Public
Script to assign hierarchical nomenclature to samples present in a distance matrix, using user-defined thresholds in a single-linkage framework
ncezid-biome/MatrixCodesās past year of commit activity - tripod Public
An analysis pipeline for checking the performance of stool_HMAS, isolate_HMAS, isolate_WGS data sets
ncezid-biome/tripodās past year of commit activity
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