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circexplorer2 error

Status: Open.

#215 In nf-core/circrna;

· skanoni opened on Oct 17, 2025

Assembly sequence analysis

bugSomething isn't workingSomething isn't working

Status: Open.

#213 In nf-core/circrna;

· lingbingzeng1985 opened on Sep 30, 2025

handling of DCC output for single-ended inputs

bugSomething isn't workingSomething isn't working

Status: Open.

#210 In nf-core/circrna;

· yerahko opened on Aug 14, 2025

Implement CycleR

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#200 In nf-core/circrna;

· nictru opened on May 1, 2025

· 

After 1.0 release

Implement CircExplorer3/CLEAR

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#198 In nf-core/circrna;

· nictru opened on Apr 23, 2025

· 

After 1.0 release

Implement CIRI3

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#197 In nf-core/circrna;

· nictru opened on Apr 23, 2025

· 

After 1.0 release

Add limit for maximum circRNA length

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#189 In nf-core/circrna;

· nictru opened on Apr 22, 2025

Add circMiner circRNA detection

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#169 In nf-core/circrna;

· nictru opened on Aug 19, 2024

Add <code>psirc quant</code> output to MulitQC via <code>kallisto</code> module

enhancementImprovement for existing functionalityImprovement for existing functionality

first-timers-onlyGood for newcomersGood for newcomers

Status: Open.

#146 In nf-core/circrna;

· nictru opened on Jun 10, 2024

· 

Before release process

Implement polyA-Benchmarking

feature-requestRequest for a new pipeline featureRequest for a new pipeline feature

Status: Open.

#143 In nf-core/circrna;

· nictru opened on Jun 9, 2024

· 

Before release process

Implement miRNA sponging analysis

feature-requestRequest for a new pipeline featureRequest for a new pipeline feature

Status: Open.

#137 In nf-core/circrna;

· nictru opened on Jun 9, 2024

· 

Before release process

Add support for RNAse-R effect correction

feature-requestRequest for a new pipeline featureRequest for a new pipeline feature

first-timers-onlyGood for newcomersGood for newcomers

Status: Open.

#105 In nf-core/circrna;

· nictru opened on Mar 18, 2024

· 

Before release process