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Commits on Jul 20, 2022

• update changelog

  maxibor

  committed
  ab08264

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• remove return set

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  committed
  d743711

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• threads is proc

  maxibor

  committed
  5b8b7eb

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• Merge remote-tracking branch 'upstream/dev' into dev

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  committed
  aa6126b

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Commits on May 23, 2022

• fix host_removal flags

  maxibor

  committed
  314c51b

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Commits on Apr 29, 2022

• Merge branch 'dev' of github.com:maxibor/eager into dev

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  committed
  889b7a0

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• move fastq to pysam

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  committed
  7c14662

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Commits on Oct 12, 2021

• add missing return character

  maxibor

  committed
  ccbb173

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• update changelog

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  committed
  36d9770

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• merge from upstream

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  committed
  bfcf424

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• speed and memory optimization

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  committed
  d4b3d31

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Commits on Sep 7, 2021

• update log message

  maxibor

  committed
  a4e9722

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• switch fastq parsing to pysam

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  committed
  6b7b0f4

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Commits on Sep 6, 2021

• Switch hostremoval_input_fastq from multiprocessing to multithreading because of memory concerns

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  committed
  6c605f3

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Commits on Apr 23, 2021

• merge from PR

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  authored
  6709431

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• update changelog

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  authored
  0e4ef9c

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Commits on Apr 19, 2021

• Update nextflow_schema.json

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  and

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  7fe1501

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• update bwa_index doc

  maxibor

  authored
  253507e

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Commits on Mar 26, 2021

• update changelog

  maxibor

  committed
  9c3b9ec

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• Merge branch 'dev' of github.com:nf-core/eager into dev

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  committed
  3814448

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Commits on Mar 25, 2021

• Merge branch 'dev' of github.com:nf-core/eager into dev

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  committed
  d11de6a

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• update gatk_hc_out_mode

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  committed
  6328dc4

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Commits on Mar 24, 2021

• fix condition preventing to run multivcfanalyzer

  maxibor

  committed
  b1a132d

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Commits on Mar 12, 2021

• make markdownlint happy

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  committed
  2a25cf7

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• update kraken process for multiqc updated kraken module

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  committed
  51681fb

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• Merge branch 'dev' of github.com:nf-core/eager into dev

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  committed
  43958a0

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Commits on Feb 22, 2021

• Merge branch 'dev' of github.com:maxibor/eager into dev

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  committed
  b40b6c7

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• Adding Kraken2 unique kmer counting

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  committed
  63128b4

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• remove db channel from kraken compatibility process

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  committed
  ee049bf

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• update changelog

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  committed
  8d76dd7

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• Adding Kraken2 unique kmer counting

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  committed
  268ed0f

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Commits on Dec 10, 2020

• update changelog

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  committed
  96135fe

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• missing = sign

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  e07e7b5

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• improve memory and error hadnling of qualimap

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  committed
  9b867cd

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Commits on Sep 10, 2020

• until_eof for unmapped reads

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  committed
  a40ae71

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