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Adapterremovalfixprefix sep #793

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Merged
jfy133 merged 1 commit into from
Sep 14, 2021
Merged

Adapterremovalfixprefix sep #793

jfy133 merged 1 commit into from
Sep 14, 2021

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@jfy133 jfy133 commented Sep 9, 2021 •
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To close #792

Tested manually. Less efficient, but results in much less debugging headaches

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
    • If you've added a new tool - have you followed the pipeline conventions in the [contribution docs](https://github.com/nf-core/eager/tree/master/.github/CONTRIBUTING.md)
    • If necessary, also make a PR on the nf-core/eager branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@jfy133 jfy133 requested a review from a team September 9, 2021 17:45
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github-actions bot commented Sep 9, 2021

This PR is against the master branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @jfy133,

It looks like this pull-request is has been made against the nf-core/eager master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the nf-core/eager dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

@jfy133 jfy133 changed the base branch from master to dev September 9, 2021 18:12
@jfy133 jfy133 merged commit 51588ca into dev Sep 14, 2021
@jfy133 jfy133 deleted the adapterremovalfixprefix-sep branch September 15, 2021 12:09
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@apeltzer apeltzer apeltzer approved these changes

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Successfully merging this pull request may close these issues.

AdapterRemovalFixPrefix piping hides error messages

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@jfy133 @apeltzer