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Remove deprecated parameters from test profiles #840

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Merged
apeltzer merged 2 commits into from
Mar 17, 2022
Merged

Remove deprecated parameters from test profiles #840

apeltzer merged 2 commits into from
Mar 17, 2022

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@jfy133
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@jfy133 jfy133 commented Mar 10, 2022 •
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Removes old parameter that leaves ugly message when running test profiles

Fixes #836

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
    • If you've added a new tool - have you followed the pipeline conventions in the [contribution docs](https://github.com/nf-core/eager/tree/master/.github/CONTRIBUTING.md)
    • If necessary, also make a PR on the nf-core/eager branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Mar 10, 2022

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@jfy133 jfy133 requested a review from a team March 10, 2022 08:28
@jfy133 jfy133 linked an issue Mar 10, 2022 that may be closed by this pull request
test_full uses deprecated parameters #836
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@apeltzer apeltzer merged commit 2300444 into dev Mar 17, 2022
@jfy133 jfy133 deleted the test-full-fix branch March 24, 2022 13:04
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test_full uses deprecated parameters

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@jfy133 @apeltzer