Patch release #861
Merged
Patch release #861
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Post release version bump
…(only reported at one cluster)
Fix snpcapture_bed
Update MQC for runtime speed up
Remove deprecated parameters from test profiles
Add step size to lc_extrap docs
Re-add piping, and hope ARFP2 doesn't pipe errors into files anymore …
Pmdtools reference masking fix , sequencetools update
Remove expected `.txt` suffix for snp coverage
Corrected the --bamutils_clip flags in the tutorials according to parameters tab. I did not check other flags, neither did a test run of the tutorials.
Corrected the --bamutils_clip flags in tutorials
… in BAM2FASTQ fiels when paired-end mapping
Samtools fastq fix
apeltzer
approved these changes
Mar 23, 2022
Markdown linting is failingTo keep the code consistent with lots of contributors, we run automated code consistency checks.
Once you push these changes the test should pass, and you can hide this comment 👍 We highly recommend setting up markdownlint in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help! Thanks again for your contribution! |
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11 tasks
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PR checklist
For 2.4.3!
scrape_software_versions.pynf-core lint .).nextflow run . -profile test,docker).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).