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Fastqc thread fix #883

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Merged
jfy133 merged 3 commits into from
May 5, 2022
Merged

Fastqc thread fix #883

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d52002e
Fix raw FASTQC single-end threads
jfy133 Apr 26, 2022
44b115f
Update CHANGELOG.md
jfy133 Apr 26, 2022
bec759f
Update CHANGELOG.md
jfy133 Apr 26, 2022
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
### `Fixed`

- [#882](https://github.com/nf-core/eager/pull/882) Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to & fix from @Lehmann-Fabian)
- [#879](https://github.com/nf-core/eager/issues/879) Add missing threads parameter for pre-clipping FastQC for single end data that caused insufficient memory in some cases (♥ to @marcel-keller for reporting)

### `Dependencies`

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2 changes: 1 addition & 1 deletion main.nf
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Expand Up @@ -703,7 +703,7 @@ process fastqc {
"""
} else {
"""
fastqc -q $r1
fastqc -t ${task.cpus} -q $r1
rename 's/_fastqc\\.zip\$/_raw_fastqc.zip/' *_fastqc.zip
rename 's/_fastqc\\.html\$/_raw_fastqc.html/' *_fastqc.html
"""
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