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Patch release dependency updates #931

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Merged
apeltzer merged 2 commits into from
Nov 8, 2022
Merged

Patch release dependency updates #931

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d78c15e
Fix MALT version to 0.61 as this will prevent previously borked MALT …
jfy133 Nov 8, 2022
116f0e1
update MQC and add pinned MALT
jfy133 Nov 8, 2022
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -16,6 +16,9 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.

### `Dependencies`

- Updated MultiQC to official 1.13 version (rather than alpha)
- Added pinned MALT dependency to ensure working version in future versions of eager

### `Deprecated`

## [2.4.5] - 2022-08-02
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5 changes: 3 additions & 2 deletions environment.yml
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Expand Up @@ -26,7 +26,7 @@ dependencies:
- bioconda::qualimap=2.2.2d
- bioconda::vcf2genome=0.91
- bioconda::damageprofiler=0.4.9 # Don't upgrade - later versions don't allow java 8
- bioconda::multiqc=1.13a
- bioconda::multiqc=1.13
- bioconda::pmdtools=0.60
- bioconda::bedtools=2.30.0
- conda-forge::libiconv=1.16
Expand All @@ -43,10 +43,11 @@ dependencies:
- bioconda::sexdeterrmine=1.1.2
- bioconda::multivcfanalyzer=0.85.2
- bioconda::hops=0.35
- bioconda::malt=0.61
- conda-forge::biopython=1.79
- conda-forge::xopen=1.1.0
- bioconda::bowtie2=2.4.4
- bioconda::eigenstratdatabasetools=1.0.2
- bioconda::mapdamage2=2.2.1
- bioconda::bbmap=38.92
- bioconda::bcftools=1.12
- bioconda::bcftools=1.12