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Reactivate DeepARG database downloading and tests as server is back up #237

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Merged
merged 2 commits into from
Mar 8, 2023
Merged

Reactivate DeepARG database downloading and tests as server is back up #237

merged 2 commits into from
Mar 8, 2023

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@jfy133 jfy133 commented Mar 8, 2023

Reactivate DeepARG, closes #186

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/funcscan branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Mar 8, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit df33ef2

+| ✅ 157 tests passed       |+
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-08 10:02:08

@jfy133 jfy133 linked an issue Mar 8, 2023 that may be closed by this pull request
Reactivate DeepARG in tests once database downloading are possible #186
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@jfy133 jfy133 requested a review from a team March 8, 2023 13:28
jasmezz
jasmezz approved these changes Mar 8, 2023
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LGTM!

@jfy133 jfy133 merged commit ff783fc into dev Mar 8, 2023
@jfy133 jfy133 deleted the reactivate-deeparg branch March 8, 2023 13:46
@jasmezz jasmezz mentioned this pull request Apr 26, 2023
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Reactivate DeepARG in tests once database downloading are possible

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@jfy133 @jasmezz