Remove taxonomic profiling from pipeline#825
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jfy133 merged 6 commits intonf-core:devfrom Jun 11, 2025
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.2.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
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@nf-core-bot fix linting |
jfy133
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Jun 11, 2025
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This looks fine to me @dialvarezs !
I will update the workflow diagrams before release in one go
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I'm going to merge this in on your behalf (sorry @dialvarezs hope that's OK!) as I need it for generating the new nf-test snapshots in teh template :) |
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Closes #824
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).