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2 changes: 1 addition & 1 deletion .nf-core.yml
Original file line number Diff line number Diff line change
Expand Up @@ -16,4 +16,4 @@ template:
name: mag
org: nf-core
outdir: .
version: 5.4.0
version: 5.5.0dev
16 changes: 16 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,22 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## dev [unreleased]

### `Added`

### `Changed`

### `Fixed`

### `Dependencies`

| Tool | Previous version | New version |
| ---- | ---------------- | ----------- |
| | | |

### `Deprecated`

## v5.4.0 - Yellow Frog [2026-02-02]

### `Added`
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2 changes: 1 addition & 1 deletion assets/multiqc_config.yml
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@@ -1,5 +1,5 @@
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/mag/releases/tag/5.4.0" target="_blank">nf-core/mag</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/mag/5.4.0/docs/output" target="_blank">documentation</a>.
This report has been generated by the <a href="https://github.com/nf-core/mag/tree/dev" target="_blank">nf-core/mag</a> analysis pipeline. For information about how to interpret these results, please see the <a href="https://nf-co.re/mag/dev/docs/output" target="_blank">documentation</a>.
report_section_order:
"nf-core-mag-methods-description":
order: -1000
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -517,7 +517,7 @@ manifest {
mainScript = 'main.nf'
defaultBranch = 'main'
nextflowVersion = '!>=25.04.2'
version = '5.4.0'
version = '5.5.0dev'
doi = '10.1093/nargab/lqac007'
}

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46 changes: 23 additions & 23 deletions ro-crate-metadata.json

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2 changes: 1 addition & 1 deletion tests/default.nf.test.snap
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Expand Up @@ -137,7 +137,7 @@
"python": "3.6.7"
},
"Workflow": {
"nf-core/mag": "v5.4.0"
"nf-core/mag": "v5.5.0dev"
}
}
],
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2 changes: 1 addition & 1 deletion tests/test_alternatives.nf.test.snap
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Expand Up @@ -110,7 +110,7 @@
"trimmomatic": 0.39
},
"Workflow": {
"nf-core/mag": "v5.4.0"
"nf-core/mag": "v5.5.0dev"
}
}
],
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2 changes: 1 addition & 1 deletion tests/test_assembly_input.nf.test.snap
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Expand Up @@ -164,7 +164,7 @@
"python": "3.6.7"
},
"Workflow": {
"nf-core/mag": "v5.4.0"
"nf-core/mag": "v5.5.0dev"
}
}
],
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2 changes: 1 addition & 1 deletion tests/test_hybrid.nf.test.snap
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Expand Up @@ -138,7 +138,7 @@
"python": "3.6.7"
},
"Workflow": {
"nf-core/mag": "v5.4.0"
"nf-core/mag": "v5.5.0dev"
}
}
],
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2 changes: 1 addition & 1 deletion tests/test_longreadonly.nf.test.snap
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Expand Up @@ -116,7 +116,7 @@
"python": "3.6.7"
},
"Workflow": {
"nf-core/mag": "v5.4.0"
"nf-core/mag": "v5.5.0dev"
}
}
],
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2 changes: 1 addition & 1 deletion tests/test_longreadonly_alternatives.nf.test.snap
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Expand Up @@ -79,7 +79,7 @@
"python": "3.6.7"
},
"Workflow": {
"nf-core/mag": "v5.4.0"
"nf-core/mag": "v5.5.0dev"
}
}
],
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2 changes: 1 addition & 1 deletion tests/test_minimal.nf.test.snap
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Expand Up @@ -41,7 +41,7 @@
"fastqc": "0.12.1"
},
"Workflow": {
"nf-core/mag": "v5.4.0"
"nf-core/mag": "v5.5.0dev"
}
}
],
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2 changes: 1 addition & 1 deletion tests/test_single_end.nf.test.snap
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Expand Up @@ -176,7 +176,7 @@
"python": "3.10.6"
},
"Workflow": {
"nf-core/mag": "v5.4.0"
"nf-core/mag": "v5.5.0dev"
}
}
],
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