Module update #125
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Module update #125
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(Except cellpose which we are deliberately holding back)
Old containers with an old version of glibc won't work when running under apptainer --nv on a newer host OS. This profile uses the more compatible but experimental --nvccli option instead for modules that are likely to be a problem. Developers running nf-test locally can select this profile as needed. Institutional configurations should be aware of the issue as well.
AlexBarbera
reviewed
Nov 11, 2025
AlexBarbera
approved these changes
Nov 11, 2025
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Update modules to latest.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).