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Tidy documentation for 3_1 #221

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Merged
Parent: release 3.2.0 -- prep for nanoRNAseq
merged 10 commits into from
Mar 8, 2023
Merged

Tidy documentation for 3_1 #221

merged 10 commits into from
Mar 8, 2023

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@christopher-hakkaart
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/nanoseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Mar 7, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 5f4711e

+| ✅ 156 tests passed       |+
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: '3.0.0'
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-08 05:57:31

yuukiiwa
yuukiiwa approved these changes Mar 8, 2023
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Thanks, @christopher-hakkaart!

@yuukiiwa yuukiiwa merged commit d939006 into dev Mar 8, 2023
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@yuukiiwa yuukiiwa yuukiiwa approved these changes

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3 participants

@christopher-hakkaart @yuukiiwa @maxulysse