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Merged
FriederikeHanssen merged 8 commits into from
Oct 4, 2023
Merged

Ncbench #1266

FriederikeHanssen merged 8 commits into from
Oct 4, 2023

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@FriederikeHanssen
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@FriederikeHanssen FriederikeHanssen commented Oct 2, 2023

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Oct 2, 2023 •
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nf-core lint overall result: Failed ❌

Posted for pipeline commit 13c23fc

+| ✅ 147 tests passed       |+
#| ❔   8 tests were ignored |#
!| ❗   1 tests had warnings |!
-| ❌   1 tests failed       |-
Details

❌ Test failures:

Failed validating 'oneOf' in schema[0]['additionalProperties']:
{'oneOf': [{'type': 'string'}, {'type': 'number'}, {'type': 'boolean'}]}

On instance['ZENODO_DEPOSIT_ID']:
None

❗ Test warnings:

  • pipeline_todos - TODO string in WorkflowSarek.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-04 19:33:31

maxulysse
maxulysse reviewed Oct 2, 2023
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Looking good

@FriederikeHanssen FriederikeHanssen changed the base branch from dev to ncbench October 4, 2023 19:51
@FriederikeHanssen FriederikeHanssen marked this pull request as ready for review October 4, 2023 19:51
@FriederikeHanssen FriederikeHanssen merged commit 8eaf157 into nf-core:ncbench Oct 4, 2023
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@FriederikeHanssen @maxulysse