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Merged
maxulysse merged 3 commits into from
Oct 17, 2023
Merged

Adding labels to the local modules #1287

maxulysse merged 3 commits into from
Oct 17, 2023

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@asp8200
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@asp8200 asp8200 commented Oct 16, 2023

Adding labels to local processes.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Oct 16, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 59b0793

+| ✅ 147 tests passed       |+
#| ❔   8 tests were ignored |#
!| ❗   1 tests had warnings |!
Details

❗ Test warnings:

  • pipeline_todos - TODO string in WorkflowSarek.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-10-16 17:01:04

@asp8200 asp8200 marked this pull request as ready for review October 16, 2023 15:14
@asp8200 asp8200 requested a review from maxulysse as a code owner October 16, 2023 15:14
FriederikeHanssen
FriederikeHanssen reviewed Oct 16, 2023
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modules/local/add_info_to_vcf/main.nf Outdated
@@ -1,5 +1,6 @@
process ADD_INFO_TO_VCF {
tag "$meta.id"
label 'process_low'
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@FriederikeHanssen FriederikeHanssen Oct 16, 2023

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I think it should be process_single, it only needs one core, right?

FriederikeHanssen
FriederikeHanssen requested changes Oct 16, 2023
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they are all super low effort processes, so I guess we can trim ressource requests even more?

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asp8200 commented Oct 16, 2023

they are all super low effort processes, so I guess we can trim ressource requests even more?

Should I set the label to process_single for all three processes?

Do you have any other recommendation

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maxulysse commented Oct 16, 2023

That's probably a smart idea too

@maxulysse maxulysse merged commit 53d0037 into nf-core:dev Oct 17, 2023
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@FriederikeHanssen FriederikeHanssen FriederikeHanssen requested changes

@maxulysse maxulysse maxulysse approved these changes

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@asp8200 @maxulysse @FriederikeHanssen