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Update Sentieon Docs #1579

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Merged
edmundmiller merged 6 commits into from
Dec 9, 2024
Merged

Update Sentieon Docs #1579

edmundmiller merged 6 commits into from
Dec 9, 2024

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@edmundmiller edmundmiller commented Jul 1, 2024 •
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Waiting until we get #1380 up and running.

@edmundmiller edmundmiller self-assigned this Jul 1, 2024
@edmundmiller edmundmiller added this to the 3.5 milestone Jul 1, 2024
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github-actions bot commented Jul 1, 2024 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit a9a4b7e

+| ✅ 215 tests passed       |+
#| ❔  11 tests were ignored |#
!| ❗   4 tests had warnings |!
Details

❗ Test warnings:

  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-12-09 11:06:56

@edmundmiller edmundmiller mentioned this pull request Jul 16, 2024
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@FriederikeHanssen FriederikeHanssen removed this from the 3.5 milestone Aug 19, 2024
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FriederikeHanssen previously approved these changes Aug 20, 2024
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Sentieon server is up and running so I think we can merge this.

I have only tested out adding a env config

env {
    SENTIEON_LICENSE = 'IP:PORT'
}

without the secrets, but this works great

@edmundmiller edmundmiller marked this pull request as ready for review August 21, 2024 22:40
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maxulysse commented Sep 13, 2024

Can you update CHANGELOG?

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edmundmiller commented Sep 19, 2024

@maxulysse As you wish!

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FriederikeHanssen commented Dec 9, 2024

@edmundmiller is this ready to go?

maxulysse
maxulysse reviewed Dec 9, 2024
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@edmundmiller edmundmiller merged commit 2a08c72 into dev Dec 9, 2024
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@edmundmiller edmundmiller deleted the sentieon branch December 9, 2024 15:49
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@maxulysse maxulysse maxulysse approved these changes

@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

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