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Glob were present in igenomes.config but not in the schema which is preventing from using the globs when not using igenomes.
close #1785

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
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  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
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@maxulysse maxulysse changed the base branch from master to dev February 12, 2025 12:48
@nf-core nf-core deleted a comment from github-actions bot Feb 12, 2025
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@maxulysse maxulysse merged commit 78e15e6 into nf-core:dev Feb 12, 2025
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params.known_indels curly braces error

3 participants