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Set a default docker registry outside of profile scope #95

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Merged
JoseEspinosa merged 2 commits into from
May 12, 2023
Merged

Set a default docker registry outside of profile scope #95

JoseEspinosa merged 2 commits into from
May 12, 2023

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@JoseEspinosa JoseEspinosa commented May 12, 2023

The docker.registry configuration should always be set, as running on cloud executors will need to pull docker images but will not necessarily use the docker profile. See nf-core/tools#2286

PR checklist

  • This comment contains a description of changes (with reason).
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • CHANGELOG.md is updated.

@JoseEspinosa JoseEspinosa marked this pull request as ready for review May 12, 2023 13:33
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github-actions bot commented May 12, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 43c2b11

+| ✅ 157 tests passed       |+
!| ❗  10 tests had warnings |!
Details

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: lib/WorkflowProteinfold.groovy
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in check_samplesheet.py: Update the script to check the samplesheet
  • pipeline_todos - TODO string in check_samplesheet.py: Update the check_samplesheet function
  • pipeline_todos - TODO string in check_samplesheet.py: Update the column names for the input samplesheet
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2023-05-12 13:34:36

@JoseEspinosa JoseEspinosa merged commit 20387d3 into nf-core:dev May 12, 2023
@JoseEspinosa JoseEspinosa deleted the quay_fix branch May 12, 2023 13:47
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@adamrtalbot adamrtalbot adamrtalbot approved these changes

@sateeshperi sateeshperi sateeshperi approved these changes

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@JoseEspinosa @adamrtalbot @sateeshperi