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nf-core/rnasplice (dev) generates a tx2gene file without transcript versions, but Salmon quantifies versioned transcripts → tximport fails with zero matches.

bugSomething isn't workingSomething isn't working

Status: Open.

#185 In nf-core/rnasplice;

· Oliverfeudj opened on Dec 17, 2025

Specification of strandedness when starting with BAMs

enhancementNew feature or requestNew feature or request

Status: Open.

#184 In nf-core/rnasplice;

· albamasmalavila opened on Dec 15, 2025

Salmon takes sorted BAM when starting pipeline from transcriptome BAM

bugSomething isn't workingSomething isn't working

Status: Open.

#183 In nf-core/rnasplice;

· albamasmalavila opened on Dec 15, 2025

diffsplice_method classical fails in nf-core/rnasplice

bugSomething isn't workingSomething isn't working

Status: Open.

#182 In nf-core/rnasplice;

· MathysHub opened on Nov 24, 2025

support for long-read rnaseq

enhancementNew feature or requestNew feature or request

Status: Open.

#181 In nf-core/rnasplice;

· apsteinberg opened on Aug 24, 2025

Summary.txt with only zeros/ rMATS_result_FDR.txt not created - NO ERROR MESSAGE

bugSomething isn't workingSomething isn't working

Status: Open.

#179 In nf-core/rnasplice;

· mlbonatelli opened on Jul 3, 2025

local/miso_sashimi.nf uses fixed parameters to visualize genes

bugSomething isn't workingSomething isn't working

Status: Open.

#177 In nf-core/rnasplice;

· pengxiao78 opened on Jun 17, 2025

no need to remove rRNA ?

Status: Open.

#176 In nf-core/rnasplice;

· hites77 opened on Jun 9, 2025

matrix is either rank-deficient or indefinite

Status: Open.

#174 In nf-core/rnasplice;

· hites77 opened on May 30, 2025

Option to run the pipeline with a subset a sample without running again Preprocessing, Alignment and quantification

enhancementNew feature or requestNew feature or request

Status: Open.

#172 In nf-core/rnasplice;

· ecapriotti opened on Apr 11, 2025

Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:DEXSEQ_DEU:DEXSEQ_ANNOTATION (genes.gtf)

bugSomething isn't workingSomething isn't working

Status: Open.

#171 In nf-core/rnasplice;

· torres-HI opened on Mar 26, 2025

Trimming parameters not used

bugSomething isn't workingSomething isn't working

Status: Open.

#170 In nf-core/rnasplice;

· misiti-1864309 opened on Mar 4, 2025