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Adressing review suggestions for Version 1.0.0#9

Merged

Felix-Kummer merged 40 commits intonf-core:devfrom

Nov 26, 2024

Commits on Aug 7, 2024

Implemented minor reviewer requests
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Commits on Aug 8, 2024

Added parameters to control publishing behavior for intermediate processing results, some minor adjustments in the docs.
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Added descriptions to custom scripts.
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Commits on Aug 21, 2024

Applied more minor changes requested by the reviewers
Felix-Kummer
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Commits on Aug 23, 2024

Commits on Aug 28, 2024

Applied one-sentence-per-line-scheme in .md files
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Commits on Aug 29, 2024

Commits on Sep 6, 2024

Replaced retry strategies with error_retry label
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Commits on Sep 19, 2024

Added tags to all modules
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Commits on Sep 26, 2024

Commits on Sep 28, 2024

Added automatic tarball extraction for input parameters
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Commits on Oct 7, 2024

Changed UNTAR container to its default container image
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Commits on Oct 11, 2024

Changed force-pyramid to process a single file instead of groups of files
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Commits on Oct 14, 2024

Merge branch 'nf-core:dev' into dev
Felix-Kummer
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Commits on Oct 18, 2024

Merge remote-tracking branch 'origin/dev' into dev
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Commits on Oct 25, 2024

Commits on Oct 26, 2024

Fixed some linter warnings
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Commits on Oct 28, 2024

Replaced for-loops with GNU parallel
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Commits on Nov 9, 2024

Migrated check result modules to nf-test
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Commits on Nov 11, 2024

Added parameter to disable all output publishing
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Commits on Nov 13, 2024

Fixed log output for preprocessing
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Commits on Nov 24, 2024

Added pipeline-level nf-test tests
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