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Remove duplicate entries from probands and upd_children in meta #420

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Merged
merged 3 commits into from
Sep 4, 2023
Merged

Remove duplicate entries from probands and upd_children in meta #420

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93b4732
remove duplicate probands and children in meta
ramprasadn Sep 4, 2023
06f717c
update changelog
ramprasadn Sep 4, 2023
3241886
Update raredisease.nf
ramprasadn Sep 4, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -31,6 +31,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Make target bed file optional for WGS mode (Issue [#375](https://github.com/nf-core/raredisease/issues/375)) [#395](https://github.com/nf-core/raredisease/pull/395)
- Added constraints to block the pipeline from running CollectWgsMetrics on WES samples [#396](https://github.com/nf-core/raredisease/pull/396)
- Updated modules from nf-core [#412](https://github.com/nf-core/raredisease/pull/412)
- If present, remove duplicate entries in probands and upd_children in the meta. [#420](https://github.com/nf-core/raredisease/pull/420)

### `Updated`

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4 changes: 2 additions & 2 deletions workflows/raredisease.nf
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Expand Up @@ -650,8 +650,8 @@ def create_case_channel(List rows) {

case_info.father = father
case_info.mother = mother
case_info.probands = probands
case_info.upd_children = upd_children
case_info.probands = probands.unique()
case_info.upd_children = upd_children.unique()
case_info.id = rows[0].case_id

return case_info
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