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adds missinf citations for bwameme #563

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Merged
merged 1 commit into from
Jun 10, 2024
Merged

adds missinf citations for bwameme #563

merged 1 commit into from
Jun 10, 2024

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@jemten
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@jemten jemten commented Jun 5, 2024

PR checklist

The citations for BWA-MEME were missing

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/raredisease branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Ensure the test suite passes (nextflow run . -profile test_one_sample,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Jun 5, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit efb39f6

+| ✅ 173 tests passed       |+
#| ❔   7 tests were ignored |#
!| ❗   2 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • actions_schema_validation - Failed to fetch schema: Response code for https://json.schemastore.org/github-workflow was 503

❔ Tests ignored:

  • files_exist - File is ignored: conf/modules.config
  • files_unchanged - File ignored due to lint config: .github/CONTRIBUTING.md
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: assets/nf-core-raredisease_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-raredisease_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-raredisease_logo_dark.png
  • modules_config - modules_config

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-06-05 16:15:05

@jemten jemten marked this pull request as ready for review June 5, 2024 16:17
ramprasadn
ramprasadn approved these changes Jun 7, 2024
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👍🏻

@jemten jemten merged commit 08f0514 into dev Jun 10, 2024
@jemten jemten deleted the update_docs_for_meme branch June 10, 2024 08:30
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@ramprasadn ramprasadn ramprasadn approved these changes

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@jemten @ramprasadn