nf-core launch fails with Could not find pipeline: when choosing pipeline and revision interactively #2411
Description
Description of the bug
Selecting the pipeline and revision interactively results in a "Could not find pipeline" error.
The cause is most likely that it gives a badly formatted revision string to nextflow pull command. Using pdb I was able to dig out the command that caused the error:
AssertionError: Command 'nextflow pull nf-core/taxprofiler -r ('1.0.1', ['dev', '1.0.1', '1.0.0', 'dev', 'donotdelete-pep-backup', 'feat/nf-tests', 'feature/kreport2krona', 'ganon-fix-database-linking', 'krona-subworkflow', 'master', 'unit-tests', 'update-taxpasta-0.4.1'])' returned non-zero error code '1':where the correct command should be just
nextflow pull nf-core/taxprofiler -r 1.0.1Command used and terminal output
nextflow pull nf-core/taxprofiler
Checking nf-core/taxprofiler ...
Already-up-to-date - revision: 07b926a89e [master]
❯ nf-core launch
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nf-core/tools version 2.9 - https://nf-co.re/
? Launch local pipeline or remote GitHub pipeline? Remote pipeline
? Pipeline name: taxprofiler
INFO NOTE: This tool ignores any pipeline parameter defaults overwritten by Nextflow config files or profiles
? Select release / branch: 1.0.1 [release]
INFO Downloading workflow: nf-core/taxprofiler (('1.0.1', ['dev', '1.0.1', '1.0.0', 'dev', 'donotdelete-pep-backup', 'feat/nf-tests', 'feature/kreport2krona', 'ganon-fix-database-linking', 'krona-subworkflow', 'master', 'unit-tests', 'update-taxpasta-0.4.1']))
ERROR Could not find pipeline: nf-core/taxprofiler (None)System information
Nextflow version 23.04.3.5875
tools version 2.9