Subworkflow install is not properly finding modules with "_" #2098
Description
Description of the bug
When installing a sub-workflow from private repository with ssh, the modules linked to that sub-workflow are not properly downloaded and installed.
However, these same modules can be properly listed and installed directly with nf-core modules command.
Command used and terminal output
When installing a custom subworkflow from a private repo using ssh:
$ nf-core subworkflows -g ssh://[email protected] install my_subworkflow
INFO: Using cached SIF image
,--./,-.
___ __ __ __ ___ /,-._.--~\
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/tools version 2.7.dev0 - https://nf-co.re
STDERR:
INFO Installing 'my_subworkflow'
WARNING There was an error running the prettier pre-commit hook.
STDERR:
ERROR Module 'create/mdr/file/object' not found in list of available modules.
INFO Use the command 'nf-core modules list' to view available software
ERROR Module 'create/results/and/map/to/files' not found in list of available modules.
INFO Use the command 'nf-core modules list' to view available software
[ ... ]
INFO Use the following statement to include this subworkflow:
include { MY_SUBWORKFLOW } from '../subworkflows/falmeida/my_subworkflow/main'
But these modules are properly there and can be listed and downloaded:
```bash
$ nf-core modules -g ssh://[email protected] list remote
INFO: Using cached SIF image
,--./,-.
___ __ __ __ ___ /,-._.--~\
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/tools version 2.7.dev0 - https://nf-co.re
INFO Modules available from ssh://[email protected] (master):
┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
┃ Module Name ┃
┡━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩
│ falmeida/createmdrfileobject │
│ falmeida/createresultsandmaptofiles │
│ [...] │
└────────────────────────────────────────┘
### System information
Nextflow v22.10.1
HPC
nf-core tools version v2.7.dev0