Deprecated .nf-core-lint.yaml still used by nf-core modules lint #2212
Description
Description of the bug
tools/nf_core/components/components_command.py
Lines 162 to 170 in 99961be
called here (and only here):
tools/nf_core/modules/lint/__init__.py
Lines 238 to 239 in 99961be
which is reached when repo_type is "pipeline" (as determined by utils.load_tools_config, which loads .nf-core.yaml and emits a warning if .nf-core-lint.yaml is present)
I didn't get time at today's hackathon to determine the real-world impact of this (just filing this issue to make sure I don't forget about it by tomorrow...), but I think the solution will be to make ComponentCommand.load_lint_config use utils.load_tools_config (or just replace the call to ComponentCommand.load_lint_config with a call to utils.load_tools_config, if the former really definitely is only used in ModuleLint)
also, there's a docstring here that still mentions the deprecated filename:
Line 344 in 99961be
Command used and terminal output
No response
System information
No response