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@psadil psadil commented Nov 29, 2023

Closes #401

By default, skull-stripping was conditional on a check whose logic was reversed in 0.13.1 (that is, run when all T1w images have had skulls stripped). This fixes the inversion.

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codecov bot commented Nov 29, 2023

Codecov Report

Attention: 1 lines in your changes are missing coverage. Please review.

Comparison is base (e460f6d) 76.98% compared to head (8b46a77) 76.98%.

Files Patch % Lines
smriprep/workflows/anatomical.py 0.00% 0 Missing and 1 partial ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##           master     #402   +/-   ##
=======================================
  Coverage   76.98%   76.98%           
=======================================
  Files          28       28           
  Lines        2042     2042           
  Branches      240      240           
=======================================
  Hits         1572     1572           
  Misses        438      438           
  Partials       32       32           
Flag Coverage Δ
ds005 ∅ <ø> (?)
ds054 45.97% <0.00%> (ø)
pytest 66.45% <0.00%> (ø)

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@psadil psadil changed the title invert result of skull-strip check in auto mode FIX: invert result of skull-strip check in auto mode Nov 29, 2023
@effigies effigies merged commit 3b0dcdb into nipreps:master Nov 29, 2023
@psadil psadil deleted the fix/reverse-skull-strip-check branch November 29, 2023 12:46
effigies pushed a commit that referenced this pull request Dec 8, 2023
effigies added a commit that referenced this pull request Mar 20, 2024
0.14.0 (March 11, 2024)

New feature release in the 0.14.x series.

This release restores correct handling of cohort identifiers in templates.
A feature release is warranted due to changes in the workflow structure.

* FIX: Fetch templates during workflow construction (#418)
* FIX: Re-add cohort identifier to template name (#416)
* FIX: Repair FreeSurfer Dependency in Dockerfile (tcsh) (#404)
* FIX: Invert result of skull-strip check in auto mode (#402)
* STY: Adopt ruff for linting and formatting (#397)
* CHORE: Update ruff, ignore certain rules (#419)
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T1w images incorrectly detected as skull-stripped (difference between 0.12.2 -> 0.13.1)

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