Oxford MMM
- 19 followers
- University of Oxford
- http://modmedmicro.nsms.ox.ac.uk/
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CompassCompact
CompassCompact PublicA compact version of Oxford Compass (Complete Pathogen Analysis Software Solution)
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gnomonicus
gnomonicus PublicPython code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
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ncov2019-artic-nf
ncov2019-artic-nf PublicForked from connor-lab/ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Repositories
- tuberculosis_amr_catalogues Public
oxfordmmm/tuberculosis_amr_catalogues’s past year of commit activity - gnomonicus Public
Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants
oxfordmmm/gnomonicus’s past year of commit activity - autocycler_ont_long_read_assembly_pipeline Public
A Nextflow pipeline for generating reference-grade consensus assemblies of clinical Enterobacterales using Oxford Nanopore Technologies (ONT) long-read DNA sequences and the consensus assembler Autocycler, with downstream quality control (CheckM2, seqkit stats) and annotation (MLST, Kraken2, Bakta, AMRFinder PLUS, MOB-suite).
oxfordmmm/autocycler_ont_long_read_assembly_pipeline’s past year of commit activity - flye_medaka_workflow Public
oxfordmmm/flye_medaka_workflow’s past year of commit activity
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