Do format updates on top of current commit rather than head. #46
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Adamtaranto
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Sep 23, 2024
* Do format updates on top of current commit rather than head. (#46) * update serde_json version * switch to using built-in temp_path * write two additional tests * Style fixes by Ruff * clean up docstrings viz cargo doc --document-private-items --------- Co-authored-by: Adam Taranto <[email protected]> Co-authored-by: ctb <[email protected]>
Adamtaranto
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Sep 23, 2024
* Add toml package as testing dependency. * Add version attribute to new KmerCountTable instances. * Test version attribute. * Track total bases consumed with attr consumed * Add tests for consumed attr * Add sum_counts attr to get total counts in table. * Add tests for sum_counts attr * Add __len__ method to get total unique kmer count. * Add tests for __len__ method. * Add __getitem__ and __setitem__ methods * Tests for __getitem__ and __setitem__ dunder methods. * Make KmerCountTable iterable * Add tests for __iter__ * Add serde and flate2 * Add serialisation support * Add serialisation tests * Add niffler * sort imports * Use niffler for gzip read/write * Style fixes by Ruff * bump serde * MRG: update serialization code (#49) * Do format updates on top of current commit rather than head. (#46) * update serde_json version * switch to using built-in temp_path * write two additional tests * Style fixes by Ruff * clean up docstrings viz cargo doc --document-private-items --------- Co-authored-by: Adam Taranto <[email protected]> Co-authored-by: ctb <[email protected]> --------- Co-authored-by: Adamtaranto <[email protected]> Co-authored-by: C. Titus Brown <[email protected]> Co-authored-by: ctb <[email protected]>
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Ruff github action was checking out head of PR before making edits, this resulted in conflicts with the incoming commit if they edit the same python files.
See if checkout incoming commit fixes this.