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Zotero2Readwise-Sync Public
Forked from e-alizadeh/Zotero2Readwise-SyncAn automated and scheduled trigger of Zotero2Readwise Python library (https://github.com/e-alizadeh/Zotero2Readwise)
MIT License UpdatedAug 2, 2025 -
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sync-paperpile-notion-v2 Public
Sync paperpile to notion
TeX Apache License 2.0 UpdatedJul 16, 2025 -
sync-paperpile-to-notion Public
Sync paperpile library to notion
TeX MIT License UpdatedJul 16, 2025 -
latex-moderncv Public
Forked from mliu7/latex-moderncvMy latex resume using the moderncv template
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nf-test Public
Forked from askimed/nf-testSimple test framework for Nextflow pipelines
Java MIT License UpdatedApr 22, 2025 -
botryllus-mhc Public
Code for early marine cordate, Botryllus schlosseri, and human-mouse MHC homology paper
Jupyter Notebook MIT License UpdatedFeb 8, 2025 -
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2022-ced9-bcl2 Public
Structural homology between C. elegans Ced9 and human BCL2
Standard ML MIT License UpdatedNov 6, 2024 -
pipedream Public
Forked from PipedreamHQ/pipedreamConnect APIs, remarkably fast. Free for developers.
JavaScript Other UpdatedOct 30, 2024 -
cheatsheets Public
Quick lookup documents for commonly used tools
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rust-decimal Public
Forked from paupino/rust-decimalDecimal number implementation written in pure Rust suitable for financial and fixed-precision calculations.
Rust MIT License UpdatedOct 9, 2024 -
dotfiles Public
Collection of rc files for easy portability
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alphafold3-pytorch Public
Forked from lucidrains/alphafold3-pytorchImplementation of Alphafold 3 in Pytorch
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nextflow-each-metadata-error Public
Repo to test nextflow `each` directive with metadata
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HTML Creative Commons Attribution 4.0 International Updated
Mar 15, 2024 -
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lsd Public
Forked from lsd-rs/lsdThe next gen ls command
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swan_vis Public
Forked from mortazavilab/swan_visA Python library to visualize and analyze long-read transcriptomes
Jupyter Notebook MIT License UpdatedJan 2, 2024 -
10xdash Public
Forked from dnbaker/10xdashPairwise similarity metrics for 10x barcoded RNASeq datasets
C++ GNU General Public License v3.0 UpdatedDec 11, 2023 -
pyo3_branchwater Public
Forked from sourmash-bio/sourmash_plugin_branchwaterPython plugin for fast search & gather
Python GNU Affero General Public License v3.0 UpdatedNov 13, 2023 -
nf-core-funcanno Public
Nextflow pipeline for functional annotation of protein sequences, focused on emerging model organisms without reference genomes
Nextflow MIT License UpdatedNov 10, 2023 -
nf-functionalhomology Public
Identifies protein sequence pairs with functional homology, but may not have sequence homology
Groovy MIT License UpdatedMar 1, 2023 -
2022-sourmash-multisearch Public
Search multiple query k-mer signatures against a database
Jupyter Notebook MIT License UpdatedFeb 18, 2023 -
bonvoyage Public
Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.
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paperpile-notion Public
Forked from jmuchovej/paperpile-notionOne-way sync Paperpile with Notion
Python MIT License UpdatedDec 17, 2022 -
scrnaseq-for-the-99-percent Public
Forked from czbiohub-sf/scrnaseq-for-the-99-percentCode accompanying the paper titled, "Single-cell transcriptomics for the 99.9% of species without reference genomes" by Botvinnik et al, 2021
Jupyter Notebook MIT License UpdatedDec 16, 2022 -
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Do sourmash multigather, but use a background k-mer distribution model to quantify significance of matches, and report all matching k-mer sequences
MIT License UpdatedDec 1, 2022 -
orpheum Public
Forked from czbiohub-sf/orpheumOrpheum is a Python package for directly predicting open reading frames (ORFs) by translating RNA-seq reads into coding protein sequence.
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