# Clone repository
git clone https://github.com/olympus-terminal/tools.git
cd tools

# Make scripts executable
chmod +x *.sh *.py *.pl

# Add to PATH (optional)
export PATH="$PATH:$(pwd)"

python break-to-100s.py large_dataset.txt

./delim_to_tab_UTF8 < data.csv > data.tsv

./only_alpha < mixed_text.txt > letters_only.txt

./get_IDs input_file.txt > ids.txt

./move_large_files.sh /source/dir /dest/dir "*.bam"

./osxrename.pl 's/old_pattern/new_pattern/g' *.txt

./filter_ckpts.sh checkpoints/ --keep-every 10

./opposite_day.sh pattern files/

python pdf_to_txt_argv.py document.pdf output.txt

python mp3xtractr.py music_library/ > metadata.csv

python neural_tts.py "Text to convert to speech" output.wav

./CatchAndSlot.sh long_running_command

./distribute_ex.sh file_list.txt server1 server2 server3

./clone_imprint_distribute template/ target_systems.txt

./download-update.sh package_name

./extract_zip_having_dups.sh archive.zip output_dir/

./force_unzip.sh corrupted.zip output_dir/

./optimized_rsync.sh /source/dir/ user@host:/dest/dir/

python getFromNCBI-gene.py gene_list.txt > gene_data.txt

./cid_make_unitigs assembly.fa > unitigs.fa

./interleave.sh reads_R1.fq reads_R2.fq > interleaved.fq

./combine-ig-headers.sh sequences.fa > combined.fa

./awktag.sh pattern input.txt

./betterthanbasename /path/to/file.tar.gz .tar.gz

# Convert CSV to TSV, extract IDs, process in chunks
cat data.csv | \
  ./delim_to_tab_UTF8 | \
  ./get_IDs | \
  python break-to-100s.py

# Rename all files matching pattern
./osxrename.pl 's/IMG_/photo_/g' *.jpg

# Move large files with progress
./move_large_files.sh raw_data/ processed_data/ "*.fastq.gz"

# Distribute configuration to multiple servers
./distribute_ex.sh config_files.txt web1 web2 web3

# Execute with error handling
./CatchAndSlot.sh ./critical_backup.sh

pip install beautifulsoup4 requests pdftotext

# Clone repository
git clone https://github.com/olympus-terminal/tools.git
cd tools

# Make all scripts executable
find . -name "*.sh" -o -name "*.py" -o -name "*.pl" | xargs chmod +x

# Compile C programs
gcc only_alpha.c -o only_alpha

# Add to PATH
echo 'export PATH="$PATH:'$(pwd)'"' >> ~/.bashrc
source ~/.bashrc