Thanks to visit codestin.com
Credit goes to github.com

Genomic Data Commons

All

84 repositories

gdc-frontend-framework
Public
TypeScript
•
Apache License 2.0
•0•13•0•7•Updated Feb 20, 2026Feb 20, 2026
gdc-docs
Public
Official repository for GDC User Guides in Markdown format
JavaScript
•
Apache License 2.0
•44•62•0•19•Updated Feb 20, 2026Feb 20, 2026
variant-filtration-cwl
Public
Workflows for filtering GDC VCFs
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•2•1•0•0•Updated Feb 16, 2026Feb 16, 2026
gdc-dnaseq-cwl
Public
CWL for GDC DNASeq workflows
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•14•23•0•3•Updated Feb 6, 2026Feb 6, 2026
gdc-sanger-somatic-tool
Public
Support scripts for the sanger somatic workflows
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•19•Updated Feb 5, 2026Feb 5, 2026
vep-cwl
Public
GDC VEP Variant Annotation Workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•3•0•0•3•Updated Jan 30, 2026Jan 30, 2026
picard_metrics_sqlite
Public
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•4•Updated Jan 26, 2026Jan 26, 2026
fastqc_to_json
Public
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•0•Updated Jan 26, 2026Jan 26, 2026
fastqc_db
Public
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•0•Updated Jan 26, 2026Jan 26, 2026
merge-sqlite
Public
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•4•Updated Jan 16, 2026Jan 16, 2026
indexclient
Public
Prototype index service client.
library core
Python
•
Apache License 2.0
•3•0•0•1•Updated Jan 13, 2026Jan 13, 2026
cdisutils
Public
Utility modules for GDC functionality
library core
Python
•2•1•0•16•Updated Jan 12, 2026Jan 12, 2026
gdc-models
Public
Git repository centrally stores and serves GDC data models defined in static YAML files
library core
Python
•1•3•4•2•Updated Jan 7, 2026Jan 7, 2026
gatk-docker
Public
docker bioinformatics
Shell
•
Apache License 2.0
•1•0•0•2•Updated Jan 7, 2026Jan 7, 2026
indexd
Public
Index service server
backend core
Python
•
Apache License 2.0
•21•3•0•14•Updated Jan 5, 2026Jan 5, 2026
gdc-somatic-variant-calling-workflow
Public
CWL for GDC somatic variant calling workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•2•2•0•1•Updated Dec 16, 2025Dec 16, 2025
muse-cwl
Public
CWL for GDC MuSE
workflow bioinformatics cwl
Shell
•
Apache License 2.0
•1•0•0•0•Updated Dec 16, 2025Dec 16, 2025
muse-tool
Public
GDC MuSE docker
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•2•Updated Dec 15, 2025Dec 15, 2025
samtools-metrics-sqlite
Public
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•4•Updated Dec 15, 2025Dec 15, 2025
samtools-mpileup-cwl
Public
CWL for GDC samtools mpileup
workflow bioinformatics cwl
Shell
•
Apache License 2.0
•1•0•0•0•Updated Dec 12, 2025Dec 12, 2025
varscan-cwl
Public
CWL for GDC VarScan2
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•1•1•0•0•Updated Dec 10, 2025Dec 10, 2025
mutect2-cwl
Public
CWL for GDC GATK3 MuTect2
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•3•0•0•0•Updated Dec 10, 2025Dec 10, 2025
gdc-rnaseq-cwl
Public
GDC RNA-Seq STAR 2-Pass Workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•8•4•0•1•Updated Dec 9, 2025Dec 9, 2025
gdc-rnaseq-tool
Public
Utility scripts for RNA-seq workflows
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•1•1•3•Updated Dec 9, 2025Dec 9, 2025
variant-filtration-tool
Public
Support tools for the GDC Variant Filtration Workflow
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•2•1•0•3•Updated Dec 9, 2025Dec 9, 2025
aliquot-maf-cwl
Public
CWL tools and workflows for generating and processing aliquot-MAF
workflow bioinformatics maf-files cwl
Common Workflow Language
•
Apache License 2.0
•2•0•0•0•Updated Nov 22, 2025Nov 22, 2025
bio-tarball-to-fastqgz
Public
Tool to extract fastq files from complicated tarballs and provide them as standard gzipped fastq files with metadata as json.
Python
•
Apache License 2.0
•0•0•0•4•Updated Nov 19, 2025Nov 19, 2025
trimmomatic-docker
Public
Software docker for trimmomatic
Shell
•
Apache License 2.0
•0•0•0•0•Updated Nov 18, 2025Nov 18, 2025
bio_qcmetrics_tool
Public
Framework for serializing QC metrics into different formats for bioinformatics workflows
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•0•0•0•0•Updated Nov 18, 2025Nov 18, 2025
vep-tool
Public
GDC VEP Plugins
docker bioinformatics workflow-tool
Perl
•
Apache License 2.0
•1•0•0•2•Updated Nov 17, 2025Nov 17, 2025