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    19 repositories

    • 3d-slicer-uncertainty-plugin

      Public
      3D Slicer plug-in for visualizing connected components along with the entire volume with functionalities of adding, deleting and viewing the individual components based on their uncertainty value.
      Python
      •1•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • TopoGAN-ECCV2020

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •6•14•1•0•Updated Apr 18, 2025Apr 18, 2025

    • trojai-submission

      Public
      Python
      •1•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • struct-uncertainty

      Public
      This repository contains the implementation for our work "Topology-Aware Uncertainty for Image Segmentation", accepted to NeurIPS 2023.
      C++
      •4•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • VesselAnalysis

      Public
      Vessel Analysis Via Topological Features
      Python
      •1•2•0•0•Updated Apr 13, 2024Apr 13, 2024

    • TopoInteraction

      Public
      This repository contains the implementation for our work "Learning Topological Interactions for Multi-Class Medical Image Segmentation", accepted to ECCV 2022 (Oral)
      deep-learningtopologypytorchsegmentationmulticlasseccv2022
      Python
      •
      MIT License
      •5•83•0•0•Updated Feb 19, 2024Feb 19, 2024

    • Calibrating_count

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Aug 29, 2023Aug 29, 2023

    • consistency-ranking-loss

      Public
      The code for ICLR2023: Confidence Estimation Using Unlabeled Data
      consistencyuncertainty-quantificationuncertainty-estimationunlabeled-dataiclr2023
      Python
      •
      MIT License
      •2•8•0•0•Updated Aug 26, 2023Aug 26, 2023

    • SpatialCorrection

      Public
      Learning to Segment from Noisy Annotations: A Spatial Correction Approach
      Python
      •2•0•0•0•Updated Jul 21, 2023Jul 21, 2023

    • MCSpatNet

      Public
      Repository for ICCV2021 MCSpatNet: Multi-Class Cell Detection Using Spatial Context Representation
      Python
      •
      MIT License
      •8•25•5•0•Updated Jun 27, 2023Jun 27, 2023

    • PersistentHomologyComputation

      Public
      This repo contains source codes for the computation of persistent homology
      C++
      •
      GNU General Public License v3.0
      •1•4•1•0•Updated Jun 18, 2023Jun 18, 2023

    • TLC-GNN

      Public
      Implementation for paper Link Prediction with Persistent Homology: An Interactive View (ICML 2021) and for paper Neural Approximation of Graph Topological Features (NeurIPS 2022)
      Python
      •1•0•0•0•Updated Nov 22, 2022Nov 22, 2022

    • GPU_ECC_SoCG2022

      Public
      This repo hosts source files for GPU ECC published at SoCG2022
      C++
      •
      GNU General Public License v3.0
      •2•5•0•0•Updated Jun 15, 2022Jun 15, 2022

    • Dataset-BRCA-M2C

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•12•0•0•Updated Jun 14, 2022Jun 14, 2022

    • CBGNN

      Public
      The code for Cycle Representation Learning for Inductive Relation Prediction (ICML 2022)
      Python
      •4•0•0•0•Updated Jun 14, 2022Jun 14, 2022

    • TopoTrojDetection

      Public
      Python
      •4•6•2•0•Updated Mar 30, 2022Mar 30, 2022

    • TopoTxR

      Public
      Repository for IPMI2020 TopoTxR: A Topological Biomarker forPredicting Treatment Response in Breast Cancer
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•13•1•0•Updated Mar 17, 2022Mar 17, 2022

    • chaochen.github.io

      Public
      HTML
      •0•0•0•0•Updated Oct 15, 2021Oct 15, 2021

    • TopoCount

      Public
      Python
      •
      MIT License
      •11•23•2•0•Updated Dec 24, 2020Dec 24, 2020