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@chicagopcdc Pediatric Cancer Data Commons

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    64 repositories

    • gearbox-frontend

      Public
      PedAL GEARBOx web UI app
      gearbox
      TypeScript
      •
      Other
      •14•5•1•4•Updated Dec 30, 2025Dec 30, 2025

    • guppy

      Public
      Server that support GraphQL queries on data from elasticsearch
      gen3pcdc
      JavaScript
      •
      Other
      •13•1•0•3•Updated Dec 29, 2025Dec 29, 2025

    • d4cg-modeling

      Public
      Python
      •0•3•3•1•Updated Dec 24, 2025Dec 24, 2025

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3pcdc
      JavaScript
      •
      Other
      •54•2•0•5•Updated Dec 24, 2025Dec 24, 2025

    • amanuensis

      Public
      Service to handle project request within the GEN3 environment
      gen3pcdc
      Python
      •
      Other
      •4•0•0•2•Updated Dec 24, 2025Dec 24, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons on AWS, GCP, Azure, and on-prem
      gen3
      Shell
      •
      Other
      •69•1•0•2•Updated Dec 23, 2025Dec 23, 2025

    • sheepdog

      Public
      API for herding data submissions
      Python
      •
      Other
      •19•0•0•0•Updated Dec 23, 2025Dec 23, 2025

    • arborist

      Public
      Gen3 policy engine
      Go
      •
      Apache License 2.0
      •16•0•0•0•Updated Dec 23, 2025Dec 23, 2025

    • PcdcAnalysisTools

      Public
      microservice for analysis tools
      gen3pcdc
      Python
      •
      Other
      •2•0•0•2•Updated Dec 23, 2025Dec 23, 2025

    • peregrine

      Public
      GraphQL search API service
      Python
      •
      Other
      •9•0•0•1•Updated Dec 23, 2025Dec 23, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      Python
      •
      Other
      •48•0•0•1•Updated Dec 23, 2025Dec 23, 2025

    • gearboxDataModel

      Public
      SQL data model for gearbox
      Python
      •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •33•0•0•4•Updated Dec 19, 2025Dec 19, 2025

    • gearbox-matching

      Public
      Gearbox backend for matching rules
      gearbox
      Python
      •
      Other
      •2•0•1•2•Updated Dec 19, 2025Dec 19, 2025

    • datadictionary

      Public
      Gen3 Generic Data dictionary
      Python
      •
      Other
      •37•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • dictionaryutils

      Public
      python wrapper and metaschema for datadictionary
      Python
      •
      Other
      •9•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • doccano

      Public
      Open source annotation tool for machine learning practitioners.
      gearbox
      Python
      •
      MIT License
      •1.8k•0•0•6•Updated Dec 17, 2025Dec 17, 2025

    • gen3-terraform

      Public
      HCL
      •
      Apache License 2.0
      •5•0•0•0•Updated Dec 16, 2025Dec 16, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •8•0•0•1•Updated Dec 11, 2025Dec 11, 2025

    • pcdc-aws-client

      Public
      Aws client package
      Python
      •
      Other
      •0•0•0•0•Updated Dec 10, 2025Dec 10, 2025

    • docs.pedscommons.org

      Public
      Repository of PCDC Documentation
      HTML
      •1•0•3•0•Updated Dec 10, 2025Dec 10, 2025

    • FHIR_resource_tabular_viewer

      Public
      JavaScript
      •2•0•0•2•Updated Nov 27, 2025Nov 27, 2025

    • pelican

      Public
      Sower jobs for PFB export & import
      Python
      •
      Apache License 2.0
      •4•0•0•1•Updated Nov 25, 2025Nov 25, 2025

    • auth-manager

      Public
      JavaScript
      •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • status_page

      Public
      CSS
      •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • gen3_etl

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•1•Updated Nov 19, 2025Nov 19, 2025

    • gen3-gitops

      Public
      ArgoCD manifests for gen3 deployments using helm charts.
      Apache License 2.0
      •0•0•0•1•Updated Nov 18, 2025Nov 18, 2025

    • d4cg_2025_ods_jamboree

      Public
      Repository for 2025 ODS Data Jamboree
      Python
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • authutils

      Public
      auth utilities for gen3 microservices
      gen3pcdc
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • cts_api_examples

      Public
      A quarto document showing examples of use the NCI's clinical trial search API (CTS API)
      HTML
      •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025