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    91 repositories

    • agr_java_software

      Public
      Java
      •
      MIT License
      •5•2•0•1•Updated Oct 27, 2025Oct 27, 2025

    • agr_curation

      Public
      CSS
      •
      MIT License
      •1•6•0•2•Updated Oct 26, 2025Oct 26, 2025

    • agr_literature_service

      Public
      Alliance Bibliographic Corpus (ABC) Manager
      Python
      •
      MIT License
      •1•1•0•0•Updated Oct 26, 2025Oct 26, 2025

    • agr_ui

      Public
      JavaScript
      •10•15•1•4•Updated Oct 24, 2025Oct 24, 2025

    • agr_pavi

      Public
      AGR Proteins Annotations and Variants Inspector
      CSS
      •
      MIT License
      •0•0•0•1•Updated Oct 24, 2025Oct 24, 2025

    • agr_literature_ui

      Public
      This is a react app for displaying information for curation from Alliance resources (Demo)
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Oct 24, 2025Oct 24, 2025

    • agr_blastdb_manager

      Public
      A tool for aggregating and generating Alliance BLAST databases.
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 24, 2025Oct 24, 2025

    • agr_sequenceserver

      Public
      Intuitive local web frontend for the BLAST bioinformatics tool
      JavaScript
      •
      GNU Affero General Public License v3.0
      •117•1•0•1•Updated Oct 24, 2025Oct 24, 2025

    • agr_automated_information_extraction

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • agr_atp_ontology

      Public
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

    • agr_curation_api_client

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

    • agr_open_data

      Public
      A repository containing instructions on utilizing AWS Open Data at the Alliance.
      0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

    • agr_ansible_devops

      Public
      Jinja
      •
      MIT License
      •0•3•0•0•Updated Oct 16, 2025Oct 16, 2025

    • agr_amplify_zfin_jbrowse2

      Public
      Drives the AWS Amplify instance of ZFIN's JBrowse 2
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

    • agr_blast_service_configuration

      Public
      This repo is used to configure the Alliance Blast Service
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • agr_amplify_jbrowse2

      Public
      Repo to build JBrowse 2 with AWS Amplify
      Perl
      •
      MIT License
      •0•2•0•1•Updated Oct 14, 2025Oct 14, 2025

    • agr_jbrowse_vcf

      Public
      Tools for processing VCF data for JBrowse
      Shell
      •
      MIT License
      •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • agr_jbrowse_gff

      Public
      Tools for processing Alliance GFF into JBrowse NCList
      Perl
      •
      MIT License
      •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025

    • agr_curation_schema

      Public
      Schema repository for the Alliance of Genome Resources persistent data store
      linkmlalliance-curationalliance-of-genome-resources
      Makefile
      •
      MIT License
      •1•11•2•0•Updated Oct 8, 2025Oct 8, 2025

    • agr_local_llm

      Public
      Repository for local embedding and LLMs at the Alliance.
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 4, 2025Oct 4, 2025

    • agr_schemas

      Public
      A repository of JSON schemas for incorporating data into the Alliance of Genome Resources.
      Python
      •
      MIT License
      •9•7•0•0•Updated Oct 1, 2025Oct 1, 2025

    • agr_vep

      Public
      A repository of pipelines for running the EnsEMBL VEP
      Perl
      •3•2•0•0•Updated Sep 25, 2025Sep 25, 2025

    • agr_ai_curation

      Public
      AI-assisted curation interface for the Alliance of Genome Resources.
      JavaScript
      •0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • agr-mcp-server-js

      Public
      Enhanced Alliance of Genome Resources MCP Server - High-performance JavaScript implementation with advanced features
      JavaScript
      •
      Other
      •1•1•0•0•Updated Sep 14, 2025Sep 14, 2025

    • agr_chipmunk

      Public
      Java
      •
      MIT License
      •6•4•0•7•Updated Sep 11, 2025Sep 11, 2025

    • agr_genedescriptions

      Public
      Concise gene descriptions generator
      Python
      •
      MIT License
      •3•3•0•0•Updated Sep 3, 2025Sep 3, 2025

    • agr_jbrowse_zfin

      Public
      JBrowse configs and GFF processing tools
      Shell
      •
      MIT License
      •0•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • agr_amplify_zfin_jbrowse1

      Public
      Repo to drive AWS amplify for ZFIN's JBrowse 1 instance
      SCSS
      •
      Other
      •0•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • agr_intermine_builder

      Public
      Build intermine containers required for AllianceMine
      Shell
      •
      MIT License
      •3•1•0•0•Updated Aug 29, 2025Aug 29, 2025

    • agr_fastapi_okta

      Public
      testing recovery of fastapi okta
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2025Aug 28, 2025